PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000032.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 178aa    MW: 20503.9 Da    PI: 4.9539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000032.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213355123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C  C++ F++   L  H++ H
  Itr_sc000032.1_g00012.1 33 YECAFCKRGFTNAQALGGHMNIH 55
                             99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-63160No hitNo description
PROSITE profilePS5015711.0743360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEVDKYTTNT SSDTSSEDSD HRPEDNVGVG RSYECAFCKR GFTNAQALGG HMNIHRKDKL  60
KAAKQNNISH HQQQQSPPRK PNYDQQYSDT RAGWATAQLS YQFNYSPPSN PSYQQVYYHH  120
TRMYGDFMGA NNDLSLRVGP SNVEDDEDEG RKEESDDDEE ETTDEVDLEL RLGRHKYR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568141.13e-42PREDICTED: transcriptional regulator TAC1
TrEMBLM1DE902e-35M1DE90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000876466e-35(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein